diff --git a/internal/native/native.go b/internal/native/native.go
index cd330e4..a631892 100644
--- a/internal/native/native.go
+++ b/internal/native/native.go
@@ -255,11 +255,13 @@ func patchPaths(dir string) {
 	exec.Command("bash", "-c",
 		fmt.Sprintf("find %s -type f \\( -name '*.sh' -o -name '*.list' -o -name '*.conf' -o -name '*.yaml' -o -name '*.yml' -o -name '*.json' \\) -exec sed -i 's|%s|%s|g' {} +",
 			dir, old, dir)).Run()
-	// Unique internal ports per instance
+	// Unique internal ports + wcli config-file per instance
 	offset := hashPort(filepath.Base(filepath.Dir(dir)))
 	exec.Command("bash", "-c",
-		fmt.Sprintf("find %s -type f \\( -name '*.yaml' -o -name '*.yml' -o -name '*.conf' \\) -exec sed -i 's|:3313|:%d|g; s|:6388|:%d|g; s|:9001|:%d|g; s|:8088|:%d|g; s|:9667|:%d|g' {} +",
-			dir, 3313+offset, 6388+offset, 9001+offset, 8088+offset, 9667+offset)).Run()
+		fmt.Sprintf("find %s -type f \\( -name '*.yaml' -o -name '*.yml' -o -name '*.conf' \\) -exec sed -i 's|:3313|:%d|g; s|:6388|:%d|g; s|:9001|:%d|g; s|:8088|:%d|g; s|:9667|:%d|g' {} + ; "+
+			"find %s -name '*.conf' -exec sed -i 's|\\(wcli run\\)$|\\1 --config-file %s/etc/wallarm/node.yaml|' {} +",
+			dir, 3313+offset, 6388+offset, 9001+offset, 8088+offset, 9667+offset,
+			dir, dir)).Run()
 }
 
 func hashPort(s string) int {